10/07/2026
Akhal-Teke stallion Sevan Shael (Saivan/Sayvan x Djennet-Shael, 2010), bred at the Shael Stud in Russia.
To support thoughtful discussion among Akhal-Teke horse supporters and others involved with rare equine breeds, we’re sharing some of the references we’ve been considering recently at the Akhal-Teke Foundation. For accessibility, we’re posting these in topical groups, with direct links as available. Second in the series:
References on genomic conservation, haplotypes, ROH, and realized inbreeding
Allendorf, Fred W., Paul A. Hohenlohe, and Gordon Luikart. 2010. “Genomics and the Future of Conservation Genetics.” Nature Reviews Genetics 11:697–709. doi:10.1038/nrg2844.
https://www.nature.com/articles/nrg2844
Beeson, Samantha K., James R. Mickelson, and Molly E. McCue. 2019. “Exploration of Fine-Scale Recombination Rate Variation in the Domestic Horse.” Genome Research 29. doi:10: 1744–1752. doi:10.1101/gr.243311.118.
https://genome.cshlp.org/lookup/doi/10.1101/gr.243311.118
Chen, Chujie, Bo Zhu, Xiangwei Tang, Bin Chen, Mei Liu, Ning Gao, Sheng Li, and Jingjing Gu. 2023. “Genome-Wide Assessment of Runs of Homozygosity by Whole-Genome Sequencing in Diverse Horse Breeds Worldwide.” Genes 14 6: 1211. doi:10.3390/genes14061211.
https://www.mdpi.com/2073-4425/14/6/1211
Colpitts, Julie, Philip D. McLoughlin, and Jocelyn Poissant. 2022. “Runs of Homozygosity in Sable Island Feral Horses Reveal the Genomic Consequences of Inbreeding and Divergence from Domestic Breeds.” BMC Genomics 23:501. doi:10.1186s12864-022-08729-9.
https://link.springer.com/article/10.1186/s12864-022-08729-9
Kardos, Marty, Gordon Luikart, and Fred W. Allendorf. 2015. “Measuring Individual Inbreeding in the Age of Genomics: Marker-Based Measures Are Better Than Pedigrees.” Heredity 115:63–72. doi:10.1038/hdy.2015.17.
https://www.nature.com/articles/hdy201517
Leitwein, Maeva, Maud Duranton, Quentin Rougemont, Pierre-Alexandre Gagnaire, and Louis Bernatchez. 2020. “Using Haplotype Information for Conservation Genomics.” Trends in Ecology & Evolution 35 3: 245–258. doi:10.1016/j.tree.2019.10.012.
https://www.sciencedirect.com/science/article/pii/S0169534719303040
Metzger, Julia, Matthias Karwath, Raúl Tonda, Sergi Beltran, Lídia Águeda, Marta Gut, Ivo Glynne Gut, and Ottmar Distl. 2015. “Runs of Homozygosity Reveal Signatures of Positive Selection for Reproduction Traits in Breed and Non-Breed Horses.” BMC Genomics 16:764. doi:10.1186/s12864-015-1977-3.
https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-015-1977-3
Moghbeli Damane, Moslem, Ahmad Ayatollahi Mehrgardi, Ali Esmailizadeh, and Mehdi Momen. 2025. “Fine-Scale Assessment of ROH Patterns and Genomic Inbreeding in Diverse Horse Breeds Using Two SNP Array Densities.” BMC Veterinary Research 21:688. doi:10.1186/s12917-025-05143-7.
https://link.springer.com/article/10.1186/s12917-025-05143-7
Schaefer, Robert J., Mikkel Schubert, Ernest Bailey, Danika L. Bannasch, Eric Barrey, Gila Kahila Bar-Gal, Gottfried Brem, Samantha A. Brooks, et al. 2017. “Developing a 670k Genotyping Array to Tag ~2M SNPs across 24 Horse Breeds.” BMC Genomics 18:565. doi:10.1186/s12864-017-3943-8.
https://link.springer.com/article/10.1186/s12864-017-3943-8
📷 Artur Baboev Horse photography, used with gratitude and permission